The objective of this five-day workshop, co-organized by the
FRB-CESAB
and the
GdR EcoStat,
is to train young researchers in reproducibility, software development and
version management tools (e.g. Git, GitHub, R Markdown, Quarto, renv, Docker),
applied to biodiversity research.
More information available here
Program
Day 1
Icebreaker and introduction of the week
Open science and Reproducible research
Research compendium & Good practices
Version control with Git & GitHub
Day 2
Basics of R Markdown
Extending R Markdown: websites, slides and dashboards
Introduction to Quarto
Pipeline toolkit with targets
Day 3
Dealing with R package versions with renv
Containerization with Docker
Building an R package
Day 4
Subgroups projects
Day 5
Subgroups projects
Projects presentation
Prerequisites
The following software must be installed before the workshop: R (latest version), RStudio et Git. Follow this tutorial to install your working environment.
You also need to create an account (free) on GitHub.
Corrections
If you see mistakes or want to suggest changes, please Create an issue on the source repository.
Reuse
The material of this website is licensed under Creative Commons Attribution CC BY 4.0. Source code is available at https://github.com/rdatatoolbox/rdatatoolbox.github.io/.
Citation
Casajus N, Bonnici I, Dray S, Gimenez O, Guéry L, Guilhaumon F, Schiettekatte NMD & Siberchicot A (2022) Workshop FRB-CESAB & GdR EcoStat: Data Toolbox for Reproducible Research in Computational Ecology. Zenodo. http://doi.org/10.5281/zenodo.4262978.