Data acquisition

## Download data (if required) ----

dl_wildfinder_data()

Data importation

## Import species list ----

sp_list  <- read_sp_list(here::here("data", "wildfinder", "wildfinder-mammals_list.csv"))

Content of the wildfinder-mammals_list file
species_id	class	order	family	genus	species	common	sci_name
15168	Mammalia	Artiodactyla	Antilocapridae	Antilocapra	americana	Pronghorn	Antilocapra americana
15290	Mammalia	Artiodactyla	Bovidae	Addax	nasomaculatus	Addax	Addax nasomaculatus
15169	Mammalia	Artiodactyla	Bovidae	Aepyceros	melampus	Impala	Aepyceros melampus
15170	Mammalia	Artiodactyla	Bovidae	Alcelaphus	buselaphus	Hartebeest	Alcelaphus buselaphus
15176	Mammalia	Artiodactyla	Bovidae	Alcelaphus	lichtensteinii	Lichtenstein’s Hartebeest	Alcelaphus lichtensteinii
15177	Mammalia	Artiodactyla	Bovidae	Ammodorcas	clarkei	Dibatag	Ammodorcas clarkei

## Import ecoregions list ----

eco_list <- read_eco_list(here::here("data", "wildfinder", "wildfinder-ecoregions_list.csv"))

Content of the wildfinder-ecoregions_list file
ecoregion_id	ecoregion	realm	biome
AA0106	Halmahera rain forests	Australasia	Tropical and Subtropical Moist Broadleaf Forests
AA0107	Huon Peninsula montane rain forests	Australasia	Tropical and Subtropical Moist Broadleaf Forests
AA0105	Central Range montane rain forests	Australasia	Tropical and Subtropical Moist Broadleaf Forests
AA0102	Banda Sea Islands moist deciduous forests	Australasia	Tropical and Subtropical Moist Broadleaf Forests
AA0103	Biak-Numfoor rain forests	Australasia	Tropical and Subtropical Moist Broadleaf Forests
AA0104	Buru rain forests	Australasia	Tropical and Subtropical Moist Broadleaf Forests

## Import merging table ----

sp_eco   <- read_sp_eco(here::here("data", "wildfinder", "wildfinder-ecoregions_species.csv"))

## Select species ----

sp_list <- select_species(sp_list, family = params$"mammals_family")

## Add ecoregions to species list ----

sp_eco_list <- add_ecoregions(sp_list, sp_eco, eco_list)

Complete dataset for Canidae species
sci_name	ecoregion
Atelocynus microtis	Araucaria moist forests
Atelocynus microtis	Bolivian Yungas
Atelocynus microtis	Caqueta moist forests
Atelocynus microtis	Eastern Cordillera real montane forests
Atelocynus microtis	Maraj≤ varzea
Atelocynus microtis	Maranhao Babaτu forests
Atelocynus microtis	Mato Grosso seasonal forests
Atelocynus microtis	Alto Paranß Atlantic forests
Atelocynus microtis	Purus-Madeira moist forests
Atelocynus microtis	Rio Negro campinarana

## Count ecoregions by species ----

counts_data <- count_ecoregions(sp_eco_list)

## Barplot ----

plot_counts(counts_data)

Number of ecoregions per Canidae species